PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc02454.1.g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 268aa    MW: 30166.9 Da    PI: 8.3509
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc02454.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.51.8e-141861548
                                  -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  + +Ed+ll++ v+q+G g W++++++ g++R +k+c++rw +yl
  Zmw_sc02454.1.g00020.1.am.mk 18 SDQEDKLLIEHVRQHGDGGWNSVSKHTGLKRNGKSCRLRWVNYL 61
                                  789*************************9*************97 PP

2Myb_DNA-binding51.91.7e-1668111247
                                   SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                   gr T +E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
  Zmw_sc02454.1.g00020.1.am.mk  68 GRITSQEERIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 111
                                   789******************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.598961IPR017930Myb domain
SMARTSM007175.4E-101363IPR001005SANT/Myb domain
SuperFamilySSF466891.83E-2518108IPR009057Homeodomain-like
PfamPF002494.2E-131861IPR001005SANT/Myb domain
CDDcd001678.27E-91861No hitNo description
Gene3DG3DSA:1.10.10.603.1E-191968IPR009057Homeodomain-like
PROSITE profilePS5129424.02762116IPR017930Myb domain
SMARTSM007176.1E-1566114IPR001005SANT/Myb domain
PfamPF002491.4E-1368111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-2369114IPR009057Homeodomain-like
CDDcd001671.57E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MFVHHPRVTA CQLRTCLSDQ EDKLLIEHVR QHGDGGWNSV SKHTGLKRNG KSCRLRWVNY  60
LRPDLKHGRI TSQEERIIVQ LHALWGNRWS TIARSLPGRT DNEIKNYWRT HFKKAKPSKN  120
IERARAPFLK QRREMQCQQQ QQQLQLVRKN EDSKLDATRT AGTVEDEDRG SAVVDNACPA  180
TTTAAVADQS GHHLAADLVM HDAIMDFMCP MSFSLLLHVA GGHHGAGGCC GSTSEEYRSS  240
EEDGATWGSL WNLEDVFVNG GRGACSLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-231811431126MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004978126.12e-98PREDICTED: transcription repressor MYB6-like
TrEMBLK3Y9D02e-98K3Y9D0_SETIT; Uncharacterized protein
STRINGSi010822m6e-98(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32433584